Detailed information of SNP:
SNP ID:
sf1119533111(Gbrowse)
Chromosome: chr11 Position: 19533111 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1409 | 94.39% | 5.61% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 489 | 84.05% | 15.95% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 328 | 79.57% | 20.43% |
Tropical Japonica | 93 | 91.40% | 8.60% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1119533111 | C->T | INTERGENIC | None |