Detailed information of SNP:



SNP ID: sf1119533111(Gbrowse)

Chromosome: chr11

Position: 19533111
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1409 94.39% 5.61%
All Indica799 99.87% 0.13%
All Japonica489 84.05% 15.95%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica328 79.57% 20.43%
Tropical Japonica93 91.40% 8.60%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1119533111 C->T INTERGENIC None