Detailed information of SNP:
|
SNP ID:
sf1119533111(Gbrowse)
Chromosome: chr11 Position: 19533111 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 94.39% | 5.61% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 489 | 84.05% | 15.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 79.57% | 20.43% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119533111 | C->T | INTERGENIC | None |