Detailed information of SNP:
|
SNP ID:
sf1119560068(Gbrowse)
Chromosome: chr11 Position: 19560068 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 94.13% | 5.87% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 477 | 83.23% | 16.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 318 | 84.91% | 15.09% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119560068 | G->A | LOC_Os11g34200(LOC_Os11g34200.1) | INTRON |