Detailed information of SNP:
|
SNP ID:
sf1119619121(Gbrowse)
Chromosome: chr11 Position: 19619121 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 97.85% | 2.15% |
| All Indica | 792 | 98.99% | 1.01% |
| All Japonica | 483 | 96.07% | 3.93% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 326 | 94.79% | 5.21% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119619121 | G->A | LOC_Os11g34290(LOC_Os11g34290.1) | Non-Synonymous SNP |