Detailed information of SNP:
|
SNP ID:
sf1119624997(Gbrowse)
Chromosome: chr11 Position: 19624997 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 91.71% | 8.29% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 479 | 76.83% | 23.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 318 | 77.67% | 22.33% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119624997 | G->A | LOC_Os11g34290(LOC_Os11g34290.1) | INTRON |