Detailed information of SNP:
|
SNP ID:
sf1119682513(Gbrowse)
Chromosome: chr11 Position: 19682513 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 50.53% | 49.47% |
| All Indica | 725 | 38.07% | 61.93% |
| All Japonica | 494 | 72.06% | 27.94% |
| Aus | 53 | 15.09% | 84.91% |
| Indica I | 325 | 40.00% | 60.00% |
| Indica II | 210 | 46.19% | 53.81% |
| Indica Intermediate | 190 | 25.79% | 74.21% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 91 | 54.95% | 45.05% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119682513 | C->T | LOC_Os11g34380(LOC_Os11g34380.1) | INTRON |