Detailed information of SNP:
|
SNP ID:
sf1119788857(Gbrowse)
Chromosome: chr11 Position: 19788857 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 50.18% | 49.82% |
| All Indica | 776 | 30.54% | 69.46% |
| All Japonica | 492 | 87.60% | 12.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 360 | 40.28% | 59.72% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 203 | 28.57% | 71.43% |
| Temperate Japonica | 332 | 93.67% | 6.33% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119788857 | T->C | INTERGENIC | None |