Detailed information of SNP:
|
SNP ID:
sf1119824731(Gbrowse)
Chromosome: chr11 Position: 19824731 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.51% | 14.49% |
| All Indica | 797 | 80.93% | 19.07% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119824731 | G->A | INTERGENIC | None |