Detailed information of SNP:
|
SNP ID:
sf1119841780(Gbrowse)
Chromosome: chr11 Position: 19841780 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 73.38% | 26.62% |
| All Indica | 770 | 62.99% | 37.01% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 356 | 74.44% | 25.56% |
| Indica II | 209 | 35.41% | 64.59% |
| Indica Intermediate | 205 | 71.22% | 28.78% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119841780 | C->T | LOC_Os11g34660(LOC_Os11g34660.1) | INTRON |