Detailed information of SNP:
|
SNP ID:
sf1119849786(Gbrowse)
Chromosome: chr11 Position: 19849786 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 86.91% | 13.09% |
| All Indica | 760 | 81.84% | 18.16% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 37 | 18.92% | 81.08% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 178 | 84.27% | 15.73% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119849786 | G->A | LOC_Os11g34680(LOC_Os11g34680.1) | INTRON |