Detailed information of SNP:
|
SNP ID:
sf1119866722(Gbrowse)
Chromosome: chr11 Position: 19866722 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 91.58% | 8.42% |
| All Indica | 795 | 88.43% | 11.57% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 82.84% | 17.16% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119866722 | C->T | INTERGENIC | None |