Detailed information of SNP:
|
SNP ID:
sf1119912487(Gbrowse)
Chromosome: chr11 Position: 19912487 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 90.52% | 9.48% |
| All Indica | 795 | 91.45% | 8.55% |
| All Japonica | 495 | 95.35% | 4.65% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119912487 | C->T | INTERGENIC | None |