Detailed information of SNP:
|
SNP ID:
sf1119991936(Gbrowse)
Chromosome: chr11 Position: 19991936 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 67.24% | 32.76% |
| All Indica | 779 | 92.81% | 7.19% |
| All Japonica | 496 | 32.26% | 67.74% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 365 | 90.96% | 9.04% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 206 | 92.23% | 7.77% |
| Temperate Japonica | 335 | 19.70% | 80.30% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119991936 | C->T | LOC_Os11g34910(LOC_Os11g34910.1) | UTR_3_PRIME |