Detailed information of SNP:
|
SNP ID:
sf1120015548(Gbrowse)
Chromosome: chr11 Position: 20015548 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.74% | 24.26% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 49.09% | 50.91% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120015548 | A->G | INTERGENIC | None |