Detailed information of SNP:
|
SNP ID:
sf1120088084(Gbrowse)
Chromosome: chr11 Position: 20088084 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.16% | 34.84% |
| All Indica | 798 | 72.56% | 27.44% |
| All Japonica | 497 | 60.76% | 39.24% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 76.47% | 23.53% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120088084 | A->T | INTERGENIC | None |