Detailed information of SNP:
|
SNP ID:
sf1120091886(Gbrowse)
Chromosome: chr11 Position: 20091886 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.19% | 36.81% |
| All Indica | 798 | 82.08% | 17.92% |
| All Japonica | 497 | 29.38% | 70.62% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 67.65% | 32.35% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 17.31% | 82.69% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120091886 | T->A | INTERGENIC | None |