Detailed information of SNP:
|
SNP ID:
sf1120094212(Gbrowse)
Chromosome: chr11 Position: 20094212 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.80% | 40.20% |
| All Indica | 799 | 81.60% | 18.40% |
| All Japonica | 496 | 29.03% | 70.97% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120094212 | A->G | INTERGENIC | None |