Detailed information of SNP:
|
SNP ID:
sf1120169468(Gbrowse)
Chromosome: chr11 Position: 20169468 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 69.99% | 30.01% |
| All Indica | 795 | 49.69% | 50.31% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 211 | 35.55% | 64.45% |
| Indica Intermediate | 209 | 23.92% | 76.08% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120169468 | G->C | INTERGENIC | None |