Detailed information of SNP:
|
SNP ID:
sf1120239030(Gbrowse)
Chromosome: chr11 Position: 20239030 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 92.21% | 7.79% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 490 | 83.27% | 16.73% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 95.77% | 4.23% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120239030 | T->A | INTERGENIC | None |