Detailed information of SNP:
|
SNP ID:
sf1120266048(Gbrowse)
Chromosome: chr11 Position: 20266048 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1286 | 97.05% | 2.95% |
| All Indica | 789 | 100.00% | 0.00% |
| All Japonica | 377 | 90.72% | 9.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 252 | 98.02% | 1.98% |
| Tropical Japonica | 74 | 75.68% | 24.32% |
| Japonica Intermediate | 51 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120266048 | C->T | LOC_Os11g35370(LOC_Os11g35370.1) | Synonymous |