Detailed information of SNP:
|
SNP ID:
sf1120334852(Gbrowse)
Chromosome: chr11 Position: 20334852 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.74% | 41.26% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120334852 | A->G | INTERGENIC | None |