Detailed information of SNP:
|
SNP ID:
sf1120335385(Gbrowse)
Chromosome: chr11 Position: 20335385 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 72.87% | 27.13% |
| All Indica | 789 | 54.50% | 45.50% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 76.94% | 23.06% |
| Indica II | 207 | 27.05% | 72.95% |
| Indica Intermediate | 209 | 41.63% | 58.37% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120335385 | G->T | INTERGENIC | None |