Detailed information of SNP:
|
SNP ID:
sf1120347359(Gbrowse)
Chromosome: chr11 Position: 20347359 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 83.40% | 16.60% |
| All Indica | 796 | 72.11% | 27.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 50.13% | 49.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120347359 | G->A | INTERGENIC | None |