Detailed information of SNP:
|
SNP ID:
sf1120372395(Gbrowse)
Chromosome: chr11 Position: 20372395 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1344 | 55.51% | 44.49% |
| All Indica | 761 | 90.01% | 9.99% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 36 | 47.22% | 52.78% |
| Indica I | 373 | 81.77% | 18.23% |
| Indica II | 183 | 98.91% | 1.09% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 45.95% | 54.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120372395 | C->A | LOC_Os11g35550(LOC_Os11g35550.1) | INTRON |