Detailed information of SNP:
|
SNP ID:
sf1120373513(Gbrowse)
Chromosome: chr11 Position: 20373513 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.94% | 13.06% |
| All Indica | 797 | 79.55% | 20.45% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 211 | 79.62% | 20.38% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120373513 | T->A | INTERGENIC | None |