Detailed information of SNP:
|
SNP ID:
sf1120374001(Gbrowse)
Chromosome: chr11 Position: 20374001 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1221 | 79.44% | 20.56% |
| All Indica | 753 | 79.81% | 20.19% |
| All Japonica | 348 | 72.13% | 27.87% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 330 | 82.12% | 17.88% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 215 | 62.33% | 37.67% |
| Tropical Japonica | 79 | 97.47% | 2.53% |
| Japonica Intermediate | 54 | 74.07% | 25.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120374001 | T->C | INTERGENIC | None |