Detailed information of SNP:
|
SNP ID:
sf1120426952(Gbrowse)
Chromosome: chr11 Position: 20426952 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 82.47% | 17.53% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 490 | 56.12% | 43.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 330 | 70.91% | 29.09% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120426952 | C->T | INTERGENIC | None |