Detailed information of SNP:
|
SNP ID:
sf1120450703(Gbrowse)
Chromosome: chr11 Position: 20450703 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 86.63% | 13.37% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 472 | 66.10% | 33.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 316 | 82.59% | 17.41% |
| Tropical Japonica | 91 | 30.77% | 69.23% |
| Japonica Intermediate | 65 | 35.38% | 64.62% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120450703 | C->T | LOC_Os11g35680(LOC_Os11g35680.1) | Non-Synonymous SNP |