Detailed information of SNP:
|
SNP ID:
sf1120465900(Gbrowse)
Chromosome: chr11 Position: 20465900 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.21% | 5.79% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120465900 | G->A | LOC_Os11g35700(LOC_Os11g35700.1) | Non-Synonymous SNP |