Detailed information of SNP:
|
SNP ID:
sf1120474198(Gbrowse)
Chromosome: chr11 Position: 20474198 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 86.05% | 13.95% |
| All Indica | 799 | 77.72% | 22.28% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120474198 | G->A | INTERGENIC | None |