Detailed information of SNP:
|
SNP ID:
sf1120475361(Gbrowse)
Chromosome: chr11 Position: 20475361 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1144 | 56.91% | 43.09% |
| All Indica | 541 | 23.11% | 76.89% |
| All Japonica | 484 | 98.55% | 1.45% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 261 | 35.25% | 64.75% |
| Indica II | 138 | 9.42% | 90.58% |
| Indica Intermediate | 142 | 14.08% | 85.92% |
| Temperate Japonica | 325 | 98.46% | 1.54% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120475361 | T->G | INTERGENIC | None |