Detailed information of SNP:



SNP ID: sf1120484650(Gbrowse)

Chromosome: chr11

Position: 20484650
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 67.37% 32.63%
All Indica796 50.75% 49.25%
All Japonica497 98.59% 1.41%
Aus67 35.82% 64.18%
Indica I373 68.63% 31.37%
Indica II213 30.52% 69.48%
Indica Intermediate210 39.52% 60.48%
Temperate Japonica335 98.51% 1.49%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 52.38% 47.62%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1120484650 C->T LOC_Os11g35710(LOC_Os11g35710.1) INTRON