Detailed information of SNP:
|
SNP ID:
sf1120495775(Gbrowse)
Chromosome: chr11 Position: 20495775 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 92.37% | 7.63% |
| All Indica | 783 | 86.72% | 13.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 362 | 73.76% | 26.24% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120495775 | G->A | LOC_Os11g35720(LOC_Os11g35720.1) | Non-Synonymous SNP |