Detailed information of SNP:
|
SNP ID:
sf1120501710(Gbrowse)
Chromosome: chr11 Position: 20501710 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 95.45% | 4.55% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 60 | 66.67% | 33.33% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120501710 | C->T | INTERGENIC | None |