Detailed information of SNP:
|
SNP ID:
sf1120501825(Gbrowse)
Chromosome: chr11 Position: 20501825 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.98% | 9.02% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120501825 | G->A | INTERGENIC | None |