Detailed information of SNP:
|
SNP ID:
sf1120504812(Gbrowse)
Chromosome: chr11 Position: 20504812 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 56.71% | 43.29% |
| All Indica | 778 | 87.66% | 12.34% |
| All Japonica | 494 | 5.06% | 94.94% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 364 | 79.40% | 20.60% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 92 | 4.35% | 95.65% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120504812 | A->C | INTERGENIC | None |