Detailed information of SNP:
|
SNP ID:
sf1120506269(Gbrowse)
Chromosome: chr11 Position: 20506269 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 56.34% | 43.66% |
| All Indica | 791 | 86.35% | 13.65% |
| All Japonica | 485 | 4.33% | 95.67% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 333 | 4.50% | 95.50% |
| Tropical Japonica | 85 | 3.53% | 96.47% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120506269 | G->T | INTERGENIC | None |