Detailed information of SNP:
|
SNP ID:
sf1120530377(Gbrowse)
Chromosome: chr11 Position: 20530377 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 94.60% | 5.40% |
| All Indica | 754 | 90.45% | 9.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 90.34% | 9.66% |
| Indica II | 201 | 90.55% | 9.45% |
| Indica Intermediate | 201 | 90.55% | 9.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120530377 | C->T | LOC_Os11g35762(LOC_Os11g35762.1) | Non-Synonymous SNP |