Detailed information of SNP:
SNP ID:
sf1120531237(Gbrowse)
Chromosome: chr11 Position: 20531237 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1398 | 89.99% | 10.01% |
All Indica | 778 | 82.78% | 17.22% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 373 | 91.69% | 8.31% |
Indica II | 203 | 77.83% | 22.17% |
Indica Intermediate | 202 | 71.29% | 28.71% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1120531237 | A->G | LOC_Os11g35762(LOC_Os11g35762.1) | INTRON |