Detailed information of SNP:
|
SNP ID:
sf1120570752(Gbrowse)
Chromosome: chr11 Position: 20570752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.56% | 10.44% |
| All Indica | 798 | 83.21% | 16.79% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120570752 | C->T | INTERGENIC | None |