Detailed information of SNP:
|
SNP ID:
sf1120650671(Gbrowse)
Chromosome: chr11 Position: 20650671 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 80.56% | 19.44% |
| All Indica | 792 | 91.67% | 8.33% |
| All Japonica | 490 | 58.37% | 41.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 83.83% | 16.17% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 330 | 43.94% | 56.06% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120650671 | A->G | INTERGENIC | None |