Detailed information of SNP:
|
SNP ID:
sf1120662630(Gbrowse)
Chromosome: chr11 Position: 20662630 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 56.24% | 43.76% |
| All Indica | 754 | 33.82% | 66.18% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 346 | 35.26% | 64.74% |
| Indica II | 208 | 26.44% | 73.56% |
| Indica Intermediate | 200 | 39.00% | 61.00% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120662630 | A->G | INTERGENIC | None |