Detailed information of SNP:
|
SNP ID:
sf1120672266(Gbrowse)
Chromosome: chr11 Position: 20672266 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 97.42% | 2.58% |
| All Indica | 787 | 98.73% | 1.27% |
| All Japonica | 486 | 95.27% | 4.73% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 99.73% | 0.27% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 328 | 94.82% | 5.18% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120672266 | T->C | LOC_Os11g35970(LOC_Os11g35970.1) | INTRON |