Detailed information of SNP:
|
SNP ID:
sf1120677806(Gbrowse)
Chromosome: chr11 Position: 20677806 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.58% | 11.42% |
| All Indica | 799 | 81.60% | 18.40% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120677806 | G->T | INTERGENIC | None |