Detailed information of SNP:
|
SNP ID:
sf1120690536(Gbrowse)
Chromosome: chr11 Position: 20690536 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 59.06% | 40.94% |
| All Indica | 783 | 35.12% | 64.88% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 369 | 34.15% | 65.85% |
| Indica II | 208 | 30.77% | 69.23% |
| Indica Intermediate | 206 | 41.26% | 58.74% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120690536 | A->G | INTERGENIC | None |