Detailed information of SNP:
|
SNP ID:
sf1120694503(Gbrowse)
Chromosome: chr11 Position: 20694503 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 66.48% | 33.52% |
| All Indica | 790 | 51.77% | 48.23% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 372 | 68.01% | 31.99% |
| Indica II | 212 | 30.66% | 69.34% |
| Indica Intermediate | 206 | 44.17% | 55.83% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120694503 | G->C | INTERGENIC | None |