Detailed information of SNP:
|
SNP ID:
sf1120701396(Gbrowse)
Chromosome: chr11 Position: 20701396 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 62.45% | 37.55% |
| All Indica | 767 | 79.01% | 20.99% |
| All Japonica | 495 | 35.15% | 64.85% |
| Aus | 30 | 60.00% | 40.00% |
| Indica I | 366 | 73.77% | 26.23% |
| Indica II | 204 | 81.86% | 18.14% |
| Indica Intermediate | 197 | 85.79% | 14.21% |
| Temperate Japonica | 333 | 19.82% | 80.18% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 8 | 100.00% | 0.00% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120701396 | T->C | INTERGENIC | None |