Detailed information of SNP:
|
SNP ID:
sf1120710857(Gbrowse)
Chromosome: chr11 Position: 20710857 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 89.28% | 10.72% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120710857 | A->C | LOC_Os11g36020(LOC_Os11g36020.1) | Non-Synonymous SNP |