Detailed information of SNP:
|
SNP ID:
sf1120712208(Gbrowse)
Chromosome: chr11 Position: 20712208 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 58.66% | 41.34% |
| All Indica | 796 | 36.93% | 63.07% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 34.93% | 65.07% |
| Indica II | 211 | 34.12% | 65.88% |
| Indica Intermediate | 210 | 43.33% | 56.67% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120712208 | C->T | LOC_Os11g36030(LOC_Os11g36030.1) | UTR_3_PRIME |