Detailed information of SNP:
|
SNP ID:
sf1120740963(Gbrowse)
Chromosome: chr11 Position: 20740963 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 798 | 52.26% | 47.74% |
| All Japonica | 497 | 57.55% | 42.45% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 75.13% | 24.87% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120740963 | G->A | LOC_Os11g36070(LOC_Os11g36070.1) | UTR_3_PRIME |
| sf1120740963 | G->A | LOC_Os11g36070(LOC_Os11g36070.2) | UTR_3_PRIME |
| sf1120740963 | G->A | LOC_Os11g36070(LOC_Os11g36070.4) | UTR_3_PRIME |
| sf1120740963 | G->A | LOC_Os11g36070(LOC_Os11g36070.3) | UTR_3_PRIME |