Detailed information of SNP:
|
SNP ID:
sf1120743620(Gbrowse)
Chromosome: chr11 Position: 20743620 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.16% | 48.84% |
| All Indica | 799 | 52.19% | 47.81% |
| All Japonica | 497 | 56.94% | 43.06% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 30.99% | 69.01% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 77.91% | 22.09% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120743620 | G->A | INTERGENIC | None |